PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g091390.1
Common NameMTR_5g091390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 311aa    MW: 35339.8 Da    PI: 7.0339
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g091390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32157214259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp++v +tYeg+Hnh+
  Medtr5g091390.1 157 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSIVMTTYEGQHNHH 214
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-34141216IPR003657WRKY domain
SuperFamilySSF1182906.02E-29149216IPR003657WRKY domain
PROSITE profilePS5081132.053151216IPR003657WRKY domain
SMARTSM007743.1E-37156215IPR003657WRKY domain
PfamPF031063.0E-25157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANENHDPFH HDELNHSNFS FSQNFQGFDP SSHSTSFSDY LHGSMDYNTL SKAFDLSCSS  60
SEVISSIDDN NTKKSSAGDL SSLVGISETP KSSESSSSNE AVIEEDSTNK KDKQPKLGCE  120
DGDDEKSKKE NKAKKKEKKV KEPRFAFLTK SEIDHLEDGY RWRKYGQKAV KNSPYPRSYY  180
RCTSQKCIVK KRVERSYQDP SIVMTTYEGQ HNHHCPATLR GNASSMLLSS SPSLFASSTS  240
MGLEQRLHQD FFSQFLPTYS QSDQQIFHQN LPQPHQQQQQ QQHQQQFQLR RDYGLLQDLL  300
PSSFPGKQEP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-261492171078Probable WRKY transcription factor 4
2lex_A1e-261492171078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g091390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4244940.0CU424494.2 Medicago truncatula chromosome 5 clone mth2-103o8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617423.10.0probable WRKY transcription factor 71
TrEMBLG7KD540.0G7KD54_MEDTR; Putative transcription factor WRKY family
STRINGAET003820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-47WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]