PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g093540.1
Common NameMTR_5g093540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 250aa    MW: 28835.2 Da    PI: 8.9733
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g093540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.64.9e-08158182226
                      --SS-EEEEEEE--TT-SS-EEEEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYr 26 
                      dDgynW+KY  K+ k+ e+ rsYY+
  Medtr5g093540.1 158 DDGYNWKKYEEKVAKEGENQRSYYK 182
                      8***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-6153182IPR003657WRKY domain
SuperFamilySSF1182902.35E-9154200IPR003657WRKY domain
SMARTSM007743.9E-6157199IPR003657WRKY domain
PROSITE profilePS5081110.969158209IPR003657WRKY domain
PfamPF031063.5E-5158183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPIRISNRLI LINHWRILGF FSSIIGFTSY AFSSSFNHLY GKWNFIKIII YTLVSFSISS  60
MMLFLKKWKL SRRFLLKAHL GSMISCAAFA LMSFCLSRQI DLGFETDLNF FLGILTVQLM  120
KINLMLSIVS LYIEIDAADS NRNEFQQNLS LRRRVNHDDG YNWKKYEEKV AKEGENQRSY  180
YKYGEIIETL YKGTHNHCKP TSSMKRNSSS EYLYSLLPSE TGPIDLLDQS FGSEQLDSDE  240
EPVKSSVSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g093540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5735041e-132CT573504.2 Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615935.11e-137uncharacterized protein LOC11415730
TrEMBLG7K8M10.0G7K8M1_MEDTR; WRKY family transcription factor
STRINGAET005740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147431012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.14e-11WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]