PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g095100.1
Common NameMTR_5g095100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 101aa    MW: 11664.3 Da    PI: 10.1485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g095100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.6e-104790148
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                     s++kGV+ +  +gr+ Ae +dp e   ++r +lg+f+   eAa a+ +
  Medtr5g095100.1 47 SKFKGVWLRQ-WGRYSAENCDPFE---KTRKWLGNFDDDIEAAIAYSK 90
                     79****8887.*******666432...5**********99****9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-114794IPR016177DNA-binding domain
PfamPF008478.3E-54788IPR001471AP2/ERF domain
PROSITE profilePS5103212.14148100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-124891IPR001471AP2/ERF domain
SMARTSM003800.00334894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MVKKTSINKN KKIEASCKKD DSSLNSKDEV ARKLYVKDIN PNKTPTSKFK GVWLRQWGRY  60
SAENCDPFEK TRKWLGNFDD DIEAAIAYSK KKDEFAERKL *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g095100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9550101e-127CR955010.2 Medicago truncatula chromosome 5 clone mth2-8n12, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027193434.11e-18ethylene-responsive transcription factor CRF6-like
SwissprotQ9M9B27e-12EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLG7K4J86e-66G7K4J8_MEDTR; AP2 domain class transcription factor
STRINGAET007148e-59(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.13e-14ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]