PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g095900.1

Common Name

MTR_5g095900

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YB

Protein Properties

Length: 184aa MW: 20268.5 Da PI: 4.3534

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g095900.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	100.7	1.1e-31	16	105	3	92
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 e r +Pianv r+mkk+lP +aki++++ke++ + ++efisfvt+ea++ c+ + r ti+++dll ++ +lGf+dy++ y++ +r+ Medtr5g095900.1 16 EFSRAFPIANVHRLMKKALPRHAKITDESKEIMVKYAAEFISFVTAEANHYCKLDCRTTITAEDLLATMQKLGFDDYAQYSFRYIQLFRH 105 557999********************************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-29	15	105	IPR009072	Histone-fold
SuperFamily	SSF47113	7.26E-24	19	104	IPR009072	Histone-fold
Pfam	PF00808	5.8E-17	20	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MLEDGVQPAS SRVQEEFSRA FPIANVHRLM KKALPRHAKI TDESKEIMVK YAAEFISFVT 60 AEANHYCKLD CRTTITAEDL LATMQKLGFD DYAQYSFRYI QLFRHGARVG QYAPPPPPPP 120 PPPQDFQAHN FPLDPNSVLT DPTEMGAILG DDDDEDRELG GGGGDGNSSD GSFDVMAFLN 180 NDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-24	19	104	11	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g095900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR931742	0.0	CR931742.2 Medicago truncatula chromosome 5 clone mth2-28i20, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024639803.1	1e-132	nuclear transcription factor Y subunit B-3
TrEMBL	G7KEG5	1e-133	G7KEG5_MEDTR; Core histone H2A/H2B/H3/H4
STRING	AET00786	1e-132	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21199	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	1e-26	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Medtr5g095900.1
Entrez Gene	11423523

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]