PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g097060.1
Common NameMTR_5g097060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SAP
Protein Properties Length: 481aa    MW: 52840.6 Da    PI: 7.1409
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g097060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP752.33.7e-22914801455
              SAP   1 mssssssssseseegseggeggdass.................gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvf 77 
                      msssssssss+s+ +s + +++d  s                 +e  ++sssrqra+nevw eP++ealatqvaidas+++Grlaaasala++f
  Medtr5g097060.1   1 MSSSSSSSSSSSQPSSPSITPYDVPSssnvvtdipgpstshqsEEAPSSSSSRQRAMNEVWLEPVVEALATQVAIDASHYHGRLAAASALAIIF 94 
                      9**********************99999************9777777788999***************************************** PP

              SAP  78 qvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGa 171
                      qvcstwr+vsrsdllwqrltrriWrrt++lrdtW+ eyiy+hrtarnf+t+r+++v++q+dp     d++ ++l+Crcl+lsd++la+Gf+dG+
  Medtr5g097060.1  95 QVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPG----DHH-QNLICRCLTLSDTHLACGFVDGS 183
                      **************************************************************6....444.89********************* PP

              SAP 172 vrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgag....aaaarrallGdvvndGalvdfaGsgrWwvGly 261
                      vrlfdl+t +hvstf+++h+ ++G+fs++vsGivi +s+l+fa+ldGd+++a+i+g+g     ++arra++Gdvvn+G+lv+faGs+rWwvGly
  Medtr5g097060.1 184 VRLFDLHTGAHVSTFWSNHGLLFGPFSQSVSGIVIGSSTLAFARLDGDVYIAIINGPGpipgPIPARRAIIGDVVNNGVLVEFAGSSRWWVGLY 277
                      ********************************************************997777899***************************** PP

              SAP 262 aGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasne 355
                      aG++G af+iWda+te++vfvGGsltdPe+v+GWhmltel+e vGrvrvtere++vaCts+rlv+f+lrn++v+lr++ +++G+iv+sld+s+e
  Medtr5g097060.1 278 AGHAGGAFQIWDAHTEQRVFVGGSLTDPETVQGWHMLTELVEPVGRVRVTEREFVVACTSTRLVCFNLRNPEVLLRDVVSTTGFIVGSLDVSHE 371
                      ********************************************************************************************** PP

              SAP 356 ayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyagg..vlrvWeiekkeg.ylyslrervg.....evnalvaddrhvav 440
                      ++vvv+++Gv+tvrrv+n+e+v+rfr+r+ + rg+l+C+n+gy+++y+gg  +lrvW+i++ ++ ++++l +r +     + n++va+++hva+
  Medtr5g097060.1 372 VFVVVERSGVGTVRRVNNFERVSRFRLRAsWLRGLLVCMNLGYVITYSGGsgLLRVWDIHEPAArLCITLPVRDDgegqvNGNSMVANQTHVAI 465
                      *****************************9*******************9889********9888********9888888889*********** PP

              SAP 441 sssdgtihlldfgaq 455
                      s++d++ihlldf++q
  Medtr5g097060.1 466 SFNDSSIHLLDFSVQ 480
                      *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.503.7E-689159No hitNo description
SuperFamilySSF813833.71E-690143IPR001810F-box domain
SuperFamilySSF509784.35E-13157345IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.8E-10160222IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.101.8E-10276477IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.35E-13388477IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSSSSSSSS SSQPSSPSIT PYDVPSSSNV VTDIPGPSTS HQSEEAPSSS SSRQRAMNEV  60
WLEPVVEALA TQVAIDASHY HGRLAAASAL AIIFQVCSTW REVSRSDLLW QRLTRRIWRR  120
TYRLRDTWQL EYIYWHRTAR NFTTGRHALV VPQYDPGDHH QNLICRCLTL SDTHLACGFV  180
DGSVRLFDLH TGAHVSTFWS NHGLLFGPFS QSVSGIVIGS STLAFARLDG DVYIAIINGP  240
GPIPGPIPAR RAIIGDVVNN GVLVEFAGSS RWWVGLYAGH AGGAFQIWDA HTEQRVFVGG  300
SLTDPETVQG WHMLTELVEP VGRVRVTERE FVVACTSTRL VCFNLRNPEV LLRDVVSTTG  360
FIVGSLDVSH EVFVVVERSG VGTVRRVNNF ERVSRFRLRA SWLRGLLVCM NLGYVITYSG  420
GSGLLRVWDI HEPAARLCIT LPVRDDGEGQ VNGNSMVANQ THVAISFNDS SIHLLDFSVQ  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g097060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9631110.0CT963111.1 Medicago truncatula chromosome 5 clone mth2-43h1, COMPLETE SEQUENCE.
GenBankCU1376590.0CU137659.1 Medicago truncatula chromosome 5 clone mth2-70k21, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617930.10.0transcriptional regulator STERILE APETALA
TrEMBLG7KEL40.0G7KEL4_MEDTR; Transcriptional regulator sterile apetala protein, putative
STRINGAET008890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76873146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.19e-90SAP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]