PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g488170.1
Common NameMTR_5g488170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 245aa    MW: 28148 Da    PI: 8.44
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g488170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+ +v+++G+++W+ +++  g+ R++k+c++rw+++l
  Medtr5g488170.1 14 KGTWSKEEDEILKAYVEKHGTRNWNEVSKNAGLIRCGKSCRLRWYNHL 61
                     799*******************************************97 PP
2Myb_DNA-binding34.74.2e-1167110145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g++++eE  +  +   ++G   W++ a++++ gR+++++k++w+
  Medtr5g488170.1  67 KGPFSEEEKSKVFEFYIKYGEFKWSKLAHELP-GRSDNDIKNFWN 110
                      79******************99**********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.938965IPR017930Myb domain
SuperFamilySSF466896.11E-2612109IPR009057Homeodomain-like
SMARTSM007172.1E-151363IPR001005SANT/Myb domain
PfamPF002497.1E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-231567IPR009057Homeodomain-like
CDDcd001671.60E-131661No hitNo description
SMARTSM007176.1E-1266115IPR001005SANT/Myb domain
PROSITE profilePS5129414.63966117IPR017930Myb domain
PfamPF002491.2E-967110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1868115IPR009057Homeodomain-like
CDDcd001678.31E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSSSSSSSST DTKKGTWSKE EDEILKAYVE KHGTRNWNEV SKNAGLIRCG KSCRLRWYNH  60
LQPDVKKGPF SEEEKSKVFE FYIKYGEFKW SKLAHELPGR SDNDIKNFWN ARKRKLEKLG  120
LSPFPDNMEP DHKLNSSQQV EDSQEDEFNI PQLKFRKYPS IFDEINEKLL DVPNMFYNNV  180
GSTSTLIDRV SSIIGTSHIH IPIALPSPCS YLPLPSPMML DEKGKKPISL EDRSLKQTLM  240
ISWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23111174109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g488170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1249721e-159AC124972.41 Medicago truncatula clone mth2-24j4, complete sequence.
GenBankAC1308031e-159AC130803.61 Medicago truncatula clone mth2-10g3, complete sequence.
GenBankCR9541851e-159CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454317.10.0transcription factor MYB101
TrEMBLA0A072UGX11e-179A0A072UGX1_MEDTR; Myb DNA-binding domain protein
STRINGAET000771e-171(Medicago truncatula)
STRINGAET000841e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15637211
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.14e-40myb domain protein 81
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]