PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g004550.1
Common NameMTR_6g004550
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 146aa    MW: 16768.9 Da    PI: 5.8042
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g004550.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26057.24.8e-183723199
           DUF260 31 anvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                     an+h+lFG sn++k+lk++ +++++++am+s+++e+e+rar P +G++g+i+++q  + ++ +el+++k+
  Medtr6g004550.1  3 ANAHRLFGISNMVKTLKSIdDDHHKDEAMKSIIFESEMRARYPSHGCLGLIMEYQDMIIESMKELDHVKQ 72
                     79*****************445559*************************************9*999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.913174IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-16371IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLANAHRLFG ISNMVKTLKS IDDDHHKDEA MKSIIFESEM RARYPSHGCL GLIMEYQDMI  60
IESMKELDHV KQLLNLCKLS HQQNLRHFSS SDHSSVPSTS SSIPIFNNVG DFPYYDRNSE  120
NNNDTQVLGN LDMIKYEEEL DYVKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g004550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450910.15e-32LOB domain-containing protein 27
TrEMBLA0A072UG641e-103A0A072UG64_MEDTR; LOB domain protein
STRINGAES998507e-33(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-16LOB domain-containing protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]