PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g005070.1

Common Name

MTR_6g005070

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 146aa MW: 15925.9 Da PI: 7.0702

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g005070.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.7	2.3e-44	9	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+ql +l++el Medtr6g005070.1 9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQLLKLQKEL 102 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Medtr6g005070.1 103 DATNA 107 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.626	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MASSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKIFGASNV SKILNEVLPH 60 QREDTVNSLA YEAEARIKDP VYGCVGAISV LQRQLLKLQK ELDATNADLI RLNHQGSSSL 120 GLGHVHSDGF FNCPSNLSND SCGDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-59	6	111	8	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-59	6	111	8	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g005070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174342	0.0	AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003618147.1	1e-105	LOB domain-containing protein 25
Refseq	XP_024641260.1	1e-105	LOB domain-containing protein 25
Refseq	XP_024641261.1	1e-105	LOB domain-containing protein 25
Refseq	XP_024641262.1	1e-105	LOB domain-containing protein 25
Swissprot	Q8L8Q3	7e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	G7KQ00	1e-103	G7KQ00_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES74365	1e-104	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-59	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Medtr6g005070.1
Entrez Gene	11423777

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]