PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g011230.1

Common Name

MTR_6g011230

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 203aa MW: 22870.2 Da PI: 7.7354

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g011230.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.6	3.1e-36	11	108	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++rrkC+kdC lapyfpa++p+ f n+h+lFG+sn++k+lk+++ee r+dam+s++ e+++ra+ Pv G++ vi+ + +++++ el Medtr6g011230.1 11 ACASCKFQRRKCSKDCLLAPYFPADKPQVFGNAHRLFGVSNISKILKQVKEEYRDDAMKSIIIESDMRAQFPVGGCLDVIMMYYGMIKNSELEL 104 7****************************************************************************************99999 PP DUF260 95 allk 98 +++k Medtr6g011230.1 105 NSVK 108 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.036	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-34	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MNINRGDTSK ACASCKFQRR KCSKDCLLAP YFPADKPQVF GNAHRLFGVS NISKILKQVK 60 EEYRDDAMKS IIIESDMRAQ FPVGGCLDVI MMYYGMIKNS ELELNSVKFL LDHCKQNLEP 120 YLSIHHSSAP SSSTRVPNPY FDTKQHFETN SMDAARVTQL ISGVSNAMEE KSNLMVTQGL 180 CHCEELLDLN GSTKFDLREK EK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-24	12	106	12	106	LOB family transfactor Ramosa2.1
5ly0_B	5e-24	12	106	12	106	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g011230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013450912.1	1e-151	LOB domain-containing protein 22
Swissprot	Q9STS6	3e-31	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A072U5L7	1e-150	A0A072U5L7_MEDTR; LOB domain protein
STRING	XP_004497769.1	5e-47	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-33	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Medtr6g011230.1
Entrez Gene	25495260

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]