PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g011610.2
Common NameMTR_6g011610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 259aa    MW: 30032.3 Da    PI: 6.6491
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g011610.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.27e-1978130456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Medtr6g011610.2  78 KKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWK 130
                      556899**********************************************9 PP
2HD-ZIP_I/II129.91e-4176168193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekk+rls eqvk+LE+sFe  +kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEk+ye+Lk+++d+lk++n++L++++++L++el++
  Medtr6g011610.2  76 EKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNNTLKAQNNKLHAELQT 168
                      69***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-2060133IPR009057Homeodomain-like
SuperFamilySSF466895.56E-2069134IPR009057Homeodomain-like
PROSITE profilePS5007117.37872132IPR001356Homeobox domain
SMARTSM003891.2E-1875136IPR001356Homeobox domain
CDDcd000868.21E-1677133No hitNo description
PfamPF000464.4E-1678130IPR001356Homeobox domain
PRINTSPR000316.8E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000316.8E-6112128IPR000047Helix-turn-helix motif
PfamPF021834.0E-14132171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAFPPSHTFI FQTHEDHHHE NILSSSTSLN SYPSFPPHQH FQGIESNHIN TNKCDELVHG  60
DEDQLSDEEG YSQMGEKKKR LSLEQVKALE KSFEIGNKLE PERKMQLAKA LGLQPRQVAI  120
WFQNRRARWK TKQLEKEYEV LKKQFDSLKA DNNTLKAQNN KLHAELQTLK KRDCFENGTI  180
SLKKENEGSW SNGSDNSSDM NLDLSRTPNS LKPTSMTQLL QCSSRSDLQD ESFCNMFNNI  240
DEQQSLWPWT DHQQHQFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.154230.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g011610.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1484820.0BT148482.1 Medicago truncatula clone JCVI-FLMt-17G6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450953.10.0homeobox-leucine zipper protein HAT7
SwissprotQ8LAT01e-72ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A072U7A80.0A0A072U7A8_MEDTR; Homeobox associated leucine zipper protein
STRINGXP_004489381.11e-139(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-64homeobox 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]