PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g011670.1
Common NameMTR_6g011670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 93aa    MW: 10630 Da    PI: 9.3639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g011670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.9e-0822581854
                     HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +  ++Lr+l+P+ + + +s K+s + +L+++++YI++L
  Medtr6g011670.1 22 ELVSKLRQLVPEiR-HRRSDKVSASKVLQETCNYIRNL 58
                     56689*******77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.245458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-81972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-92078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-52258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQQS SSSRISDDQI IELVSKLRQL VPEIRHRRSD KVSASKVLQE TCNYIRNLHR  60
EVDDLSERLS QLLVTIDADS PEANIIRSLI NQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.178241e-155flower| root
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g011670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450955.12e-57transcription factor PRE5
SwissprotQ9LJX19e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A072UGS56e-56A0A072UGS5_MEDTR; Putative transcription factor bHLH family
STRINGGLYMA13G05280.17e-51(Glycine max)
STRINGGLYMA19G02510.17e-51(Glycine max)
STRINGXP_007151219.17e-51(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]