PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g017200.1
Common NameMTR_6g017200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 155aa    MW: 17476.8 Da    PI: 9.4133
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g017200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1621.8e-1972152181
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                      +fYneY+k++GF +r+++ +ksk +g  t+r+f+C keg r  +k++ + + ++rae rtgC a++++++++  +k++v ++
  Medtr6g017200.1  72 EFYNEYSKRIGFGIRREYGNKSKVDGVLTSRRFTCFKEGVRGVDKRR-QPKGEPRAEIRTGCLARMVISLDRkIEKYKVVDF 152
                      6******************************************9999.99********************998999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1572152IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MREPHHPATN TSQPVAAVSN HPSAAAIVFD QDCVDKLVNY IHEHNVQHGQ GSIANNVPHL  60
EMKFDSESAA YEFYNEYSKR IGFGIRREYG NKSKVDGVLT SRRFTCFKEG VRGVDKRRQP  120
KGEPRAEIRT GCLARMVISL DRKIEKYKVV DFIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g017200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350211e-178AC235021.3 Medicago truncatula strain A17 clone WTSI_1018-172G23, complete sequence.
GenBankAC2397171e-178AC239717.2 Medicago truncatula strain A17 clone WTSI_1018-144o6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626525.11e-105protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072U8781e-112A0A072U878_MEDTR; FAR1 DNA-binding domain protein
STRINGXP_004497702.17e-56(Cicer arietinum)
STRINGAES597593e-55(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]