PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g027290.1
Common NameMTR_6g027290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 177aa    MW: 20376.5 Da    PI: 9.6208
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g027290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.47.9e-163182657
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      f+++q+ +L+++ + n++p++++r +LAkk+gL+ +q+k WF N+Ra  kk
  Medtr6g027290.1 31 GFSDYQISILQKFMAWNSNPNEAQRNQLAKKVGLEPKQIKHWFDNKRATVKK 82
                     699********99999********************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-151584IPR009057Homeodomain-like
PROSITE profilePS5007114.9492383IPR001356Homeobox domain
SMARTSM003891.4E-102487IPR001356Homeobox domain
PfamPF000462.5E-133082IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-143289IPR009057Homeodomain-like
CDDcd000866.10E-123283No hitNo description
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVYSMGGIGG SGDKAIDNSV SNNQSRPQYK GFSDYQISIL QKFMAWNSNP NEAQRNQLAK  60
KVGLEPKQIK HWFDNKRATV KKKDMKEDNK ALCAARKELI TENIVVKKIL KMTFCESCGG  120
PSFPMHEHER FMQKMRMENE MLKEKIEKIS TLLARYEQKE ISQLEFEHTF ACLNAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g027290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072U8211e-129A0A072U821_MEDTR; Homeobox leucine zipper protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.15e-30homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]