PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g027700.1
Common NameMTR_6g027700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 210aa    MW: 23186.2 Da    PI: 8.8103
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g027700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.96.2e-3771071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+l+rkC++ C++apyf ++q +++fa+vhk+FGa nv+k l+++p++++++am++++yeA+ar++dP++G+v++i +l++q++ l+ae
  Medtr6g027700.1   7 PCGACKHLKRKCTNRCIFAPYFGKKQnEASFAAVHKVFGAGNVSKHLSTIPTNHHKKAMETITYEAQARISDPINGCVSTICALKKQVKALQAE 100
                      7*********************9988689***************************************************************** PP

           DUF260  94 lallkee 100
                      ++++k++
  Medtr6g027700.1 101 VSMMKAQ 107
                      *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9036108IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MADISIPCGA CKHLKRKCTN RCIFAPYFGK KQNEASFAAV HKVFGAGNVS KHLSTIPTNH  60
HKKAMETITY EAQARISDPI NGCVSTICAL KKQVKALQAE VSMMKAQQQM NNGFAYVNAL  120
QTTDLQHQQM LQQPNFNVSV EPAYANNPSP SIEDLMNMNN FNPVLAATNN LMNMNNFNPG  180
FDTTKETASS SQSFQPFQNS RFSYHQGDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-28710111104LOB family transfactor Ramosa2.1
5ly0_B8e-28710111104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g027700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451537.11e-156LOB domain-containing protein 20
TrEMBLA0A072UIB61e-154A0A072UIB6_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGXP_004489657.13e-66(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-43LOB domain-containing protein 20
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]