PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g032830.1
Common NameMTR_6g032830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 262aa    MW: 29537.3 Da    PI: 8.4729
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g032830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.2e-17194228135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Medtr6g032830.1 194 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 228
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.6E-14188242IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.213188224IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-14191251No hitNo description
Gene3DG3DSA:3.30.50.102.5E-13192226IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-12193240No hitNo description
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
PfamPF003207.5E-15194228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDICNNVSVS EEFQQEFSTI DDLFPAHNTE VDLGMEWLSV FVEECFSSKP SCVIAPSSNV  60
QIQESTNTKP SNTMQKPQQQ NQSYLQNFVV PGKARSKRKR LSAPSTNIWS HSHLISDGNL  120
ISDPPLLKQA YWLADSELIA PKNEQKVSAV AYGDQKEAKR RVKKESYEVG IIQVKNSENV  180
NDDDEEHIPN ARRCTHCLSQ RTPQWRAGPL GPKTLCNACG VRYKSGRLLP EYRPAKSPTF  240
VSYLHSNSHK KVLEMRMQSI K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.186870.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g032830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1417410.0BT141741.1 Medicago truncatula clone JCVI-FLMt-15D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003619010.20.0GATA transcription factor 9
TrEMBLG7KQ550.0G7KQ55_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES752281e-160(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-47GATA transcription factor 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]