PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g033345.1
Common NameMTR_6g033345
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 245aa    MW: 26279.4 Da    PI: 6.6532
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g033345.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08124159441
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                      WT  E   +++a   +G++ ++ Ia+++g +++ +qc+
  Medtr6g033345.1 124 WTDVEKAAFLHALSSYGKD-FAMIAQYVG-TKSQYQCR 159
                      *****************99.*********.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-10118170IPR009057Homeodomain-like
PROSITE profilePS5129312.023119170IPR017884SANT domain
SMARTSM007170.0032120168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4122164IPR009057Homeodomain-like
PfamPF002491.2E-6123159IPR001005SANT/Myb domain
CDDcd001676.22E-6124159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAVGIACNRK TCSGRALWRG YDNKAMSTGV SFITEKPNCF NIIRNENATV AAGVFTSICS  60
GCLLSEAASS SITSSAVHVR GKRVGKSVKA RSINKQPLMT VITRDIDQET CSNKSSGEVE  120
LTDWTDVEKA AFLHALSSYG KDFAMIAQYV GTKSQYQCRV LFSKTHKHNG MDLIGQRAEI  180
VGLPGDDDVD GGRSDADNAC IAETGSVNDS DTSGTKTGVD QLAYDKNAYH DESIPMETRN  240
LQLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g033345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642022.13e-95uncharacterized protein LOC25495914 isoform X1
RefseqXP_024642023.13e-95uncharacterized protein LOC25495914 isoform X1
RefseqXP_024642024.13e-95uncharacterized protein LOC25495914 isoform X2
TrEMBLA0A396HE170.0A0A396HE17_MEDTR; Putative transcription factor MYB/SANT family
STRINGXP_004489929.14e-78(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-14MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]