PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g036740.1
Common NameMTR_6g036740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 340aa    MW: 38458.3 Da    PI: 7.6821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g036740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.9e-121181843097
                      ..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  30 keesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++++++ l +++g+ W v+    +k   ++ l +GW +Fv  n +k+gD++++kl+++ ef  +v+++
  Medtr6g036740.1 118 PKCNTKIFLHNLKGEHWIVNSVTkTKIHTSHSLCGGWTDFVCGNSIKVGDVCILKLIQECEF--RVRII 184
                      56899**************99554777777***************************99988..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.53E-11114184No hitNo description
SuperFamilySSF1019363.14E-12117184IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-9118185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-12118185IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.671123187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAALLNGSIK QVLDCVTTDI LGLIVGYSRF HQDIGYSDKV WNINFDSQAE QRDSNGSETN  60
NSVEEINTEL HWLYLLKLSI KRLLILPSNQ PAKEPKTAHW VICQWFSYYE YTPSIFDPKC  120
NTKIFLHNLK GEHWIVNSVT KTKIHTSHSL CGGWTDFVCG NSIKVGDVCI LKLIQECEFR  180
VRIITKVRKD WLAPAYEEAL NADLPTIPLN TTQHMGGIKK VIHVAFTHLA LSVGDITSGN  240
GDSFYVCKNV GDDRRLLYTG SCAEILNMKN SQELKKEFLW AEVSLVELKL VPMRVVSCSL  300
KKSTCMGSSY RNERRIEEIE FRVYGGGIKD VAMYWPPSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g036740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743460.0AC174346.36 Medicago truncatula chromosome 6 clone mth2-171p9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7KI940.0G7KI94_MEDTR; B3 DNA-binding domain protein
STRINGAES753030.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]