PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g038890.1
Common NameMTR_6g038890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 219aa    MW: 24341.8 Da    PI: 8.9124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g038890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.81.7e-16188215229
                      --SS-EEEEEEE--TT-SS-EEEEEE-S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCts 29 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+
  Medtr6g038890.1 188 NDGCQWRKYGQKMAKGNPCPRAYYRCTM 215
                      8**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.930.104.7E-72070No hitNo description
Gene3DG3DSA:2.20.25.805.3E-17172215IPR003657WRKY domain
SuperFamilySSF1182901.44E-14180215IPR003657WRKY domain
PROSITE profilePS5081116.57182218IPR003657WRKY domain
SMARTSM007741.2E-6187217IPR003657WRKY domain
PfamPF031065.5E-13188215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTFRKKAFSV MDGEILKLVY DTPVFELREA LIGKYGEISK LVYDIADKGG ELCSWRSDLT  60
VPFSRFADMD GLSSLKSFYI PMTYASPATK NKHIVKGKAE EKGDGVVARK FMNGPAAKVD  120
DQQEPEPCTP QNNHKEPDPD ASELVQLLDR SQLPRLNPSN AADQANAEAT MRKARVSVRA  180
RSEAHMINDG CQWRKYGQKM AKGNPCPRAY YRCTMALG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g85_A2e-1918481167Histidine-tRNA ligase, cytoplasmic
4g85_B2e-1918481167Histidine-tRNA ligase, cytoplasmic
4phc_A2e-1918470156Histidine--tRNA ligase, cytoplasmic
4phc_B2e-1918470156Histidine--tRNA ligase, cytoplasmic
4phc_C2e-1918470156Histidine--tRNA ligase, cytoplasmic
4phc_D2e-1918470156Histidine--tRNA ligase, cytoplasmic
4x5o_A2e-1918470156Histidine--tRNA ligase, cytoplasmic
4x5o_B2e-1918470156Histidine--tRNA ligase, cytoplasmic
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143240.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g038890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0276651e-154CT027665.3 Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE.
GenBankCT9631151e-154CT963115.2 Medicago truncatula chromosome 5 clone mte1-43g8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610463.23e-86probable WRKY transcription factor 31
TrEMBLA0A072UA841e-163A0A072UA84_MEDTR; WRKY family transcription factor
STRINGAES970531e-108(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-30WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]