PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g043480.1
Common NameMTR_6g043480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 231aa    MW: 26111.3 Da    PI: 7.5007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g043480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08108149344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +W++ E++l+v +  ++G+g W  Ia+ +  ++t+ q+ s+ 
  Medtr6g043480.1 108 PWSQLEHDLFVMGMIKYGKGKWIEIAKNFVCNKTPQQVESYA 149
                      8*****************************899*****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.084104157IPR017884SANT domain
SMARTSM007179.7E-5105155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-7108148IPR009057Homeodomain-like
CDDcd001673.90E-6108153No hitNo description
PfamPF002492.1E-6108148IPR001005SANT/Myb domain
SuperFamilySSF466895.93E-9108155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MPIETTDLTN FLDSPPSPHI SSSNTSTILN FDHVFTNPIL HHHVQHHRHQ TTLLVPPTTQ  60
GYTNESTRIT TDWPQPATHG RSLIARVLRP FPRSDTMPFP NGSRLMVPWS QLEHDLFVMG  120
MIKYGKGKWI EIAKNFVCNK TPQQVESYAT SFFRYLPDTY VHGLSKRKRN NMTVNNDHAK  180
ETLTLFPEVP TFYGGEASSS KNTNNYEAST SMTLHVGDGE VDVELRFGLN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g043480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1568308e-43AC156830.26 Medicago truncatula chromosome 8 clone mth2-151m10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192183.13e-69uncharacterized protein LOC101488688
TrEMBLA0A072U8T91e-171A0A072U8T9_MEDTR; MYB-like DNA-binding domain protein
STRINGAET035633e-89(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14942612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-13Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]