PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g043490.1

Common Name

MTR_6g043490

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

MYB_related

Protein Properties

Length: 231aa MW: 26025.3 Da PI: 8.4916

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g043490.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	108	149	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +W++ E++l+v + ++G+g+W+ I++ + ++t+ q++s+ Medtr6g043490.1 108 PWSQLEHDLFVMGMIKYGKGRWSEIPKNFVCNKTPQQVQSYA 149 8***************************89*****996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.464	104	157	IPR017884	SANT domain
SMART	SM00717	1.6E-6	105	155	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-8	108	148	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-7	108	149	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.73E-9	108	155	IPR009057	Homeodomain-like
CDD	cd00167	2.16E-7	108	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MPIETTDLTN FLDSPPSPHI SSSNAPTILN FDHVFTNHNL HHHVQHHRHQ TTLLAPPTAQ 60 GNTHVSTRIT TDWPQPATHG RSLIARVLRP LPGSDTMPFP NASRLMVPWS QLEHDLFVMG 120 MIKYGKGRWS EIPKNFVCNK TPQQVQSYAT SFFRYLPDTY VHGLRKRKRN NMIVNNDLAK 180 ETLTLFPEVP TFYGGEASSS KNTNNYEAST YMTLHVGDGE VDVELRLGLN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g043490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC156830	1e-44	AC156830.26 Medicago truncatula chromosome 8 clone mth2-151m10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027192183.1	3e-69	uncharacterized protein LOC101488688
TrEMBL	A0A072UAF3	1e-171	A0A072UAF3_MEDTR; MYB-like DNA-binding domain protein
STRING	AET03563	1e-94	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14942	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-13	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Medtr6g043490.1
Entrez Gene	25496305

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]