PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g045327.1
Common NameMTR_6g045327
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 388aa    MW: 43606 Da    PI: 6.4548
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g045327.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.44.8e-21172225155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rl+W++ + ++F++av+q  G ++A Pk+i e+m+v+gLt eh++SHLQk R+
  Medtr6g045327.1 172 KNRLKWSQAMQQEFLRAVNQF-GLDNAKPKKIIEVMNVPGLTKEHIASHLQKLRI 225
                      78*******************.******************************997 PP
2Response_reg50.98.7e-18201301111
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl++d + ++ +++ +     ++ +v+++++++ al+ll+e +  +D+il+  ++++m+ +++l++i+++  ++p+i+++  g+ + a +a+  
  Medtr6g045327.1  20 VLVIDHDTTIHNVIVEKSIGWDF-KVTTCSNASFALTLLREAKgcFDVILIEEQISDMNSYDFLQQITQQI-NIPVIMMGKDGSTSAAMKAIAN 111
                      78888888888888888889***.******************99***********************9988.9********************* PP

                      TESEEEESS--HHHHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvkav 111
                      Ga ++ +Kp + ++l+k +
  Medtr6g045327.1 112 GACEYCVKPLSDDDLIKNI 130
                      ***************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-2316152No hitNo description
SuperFamilySSF521721.57E-2216144IPR011006CheY-like superfamily
SMARTSM004482.5E-1218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.05619134IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.5E-1220130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.58E-1421130No hitNo description
SuperFamilySSF466892.24E-15170229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-23170229IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-19172225IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MALSTEMEAL PQQFLEGPRV LVIDHDTTIH NVIVEKSIGW DFKVTTCSNA SFALTLLREA  60
KGCFDVILIE EQISDMNSYD FLQQITQQIN IPVIMMGKDG STSAAMKAIA NGACEYCVKP  120
LSDDDLIKNI CQHVSRKSLN ENKHDQIHVD NGTKETHVDV VEKDNYQPPT KKNRLKWSQA  180
MQQEFLRAVN QFGLDNAKPK KIIEVMNVPG LTKEHIASHL QKLRIALKNE MPKGKWKKSK  240
QDQCHHPTET QLGLEAAKST PELDQNVKNS VIQCDNNSHA PQHSSIFANL FTDQSDVQSS  300
VIQCDNNSYT PQHSQTFANI FTHQSNVQNF VIQCDNNSHA PQHSPPFANI FTAQSSVLNS  360
YAPQHSSTFG NIFTYQSNMN PYDEFFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-13171228461ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g045327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642200.10.0two-component response regulator ARR14
TrEMBLA0A072U9080.0A0A072U908_MEDTR; Response regulator receiver domain protein
STRINGXP_004515485.19e-61(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1563334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.14e-49response regulator 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]