PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g047550.1
Common NameMTR_6g047550
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 274aa    MW: 31284.4 Da    PI: 6.4044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g047550.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.9e-10173218454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ + f  L  l+P++     kK++K ++L  +++Y+k+L
  Medtr6g047550.1 173 DHIMAERKRREKLTQNFIALAALVPNL-----KKVDKYSVLVDTIKYLKEL 218
                      699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.452169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14173235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.08E-11174223No hitNo description
SuperFamilySSF474597.72E-15174236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-9175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEEINNTTMN VSSTNGWLSD LEMDEYNLFA EESNLNFLET DVVEFLSHDI GNVFLEQNKQ  60
QCFTSGSTPT SLCNSSSYET NLDSFDFDFD KPNMELKTID HIHSNKINET FSPKLSPSNS  120
SIQFQIPSFD NTPNSPTTNS SQLCGLDPTF NSKQNSEIKT SKSKRSRTLH GQDHIMAERK  180
RREKLTQNFI ALAALVPNLK KVDKYSVLVD TIKYLKELKK RLKVLEEQNE KTKIESLVVV  240
LTKQAFATMT TPPHVMRVLI VLLIYHFKWK QES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERKRRE
2178183RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g047550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452170.11e-142transcription factor bHLH19
TrEMBLA0A072U9530.0A0A072U953_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES908105e-77(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-18bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]