PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g051425.1
Common NameMTR_6g051425
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 341aa    MW: 39142.8 Da    PI: 8.4545
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g051425.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.7e-2132124291
             FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       Y+e++ ++GFsvrk k+ +  ++++++  ++++Csk+g++++e +     +   +ra +rt+Cka+++ + +kdg+w++tkl  +HnH+l+p
  Medtr6g051425.1  32 LYQEHGFKMGFSVRKGKELYYdNDKKNTRLKDYYCSKQGFKNNEPEGeiVGEVAYQRADSRTNCKAMVRFNVSKDGEWRITKLIMDHNHALVP 124
                      7**************98765526666677899*********99998866677788***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1932124IPR004330FAR1 DNA binding domain
PfamPF105512.0E-9245289IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEGSECQAVE IDKPRDIFLG QVVQSKDEAY NLYQEHGFKM GFSVRKGKEL YYDNDKKNTR  60
LKDYYCSKQG FKNNEPEGEI VGEVAYQRAD SRTNCKAMVR FNVSKDGEWR ITKLIMDHNH  120
ALVPLEQRHL LRSMRKVSET KGGLIKSMVN AGMKVTHVWS YLGEEVGGFD KLGMTMKDVH  180
NFVYTEKSKL IKGGDAQSLI NHLQNRQAQD AMFYYSVQLD QESRLTNVFW RDGKSKVDYD  240
CFGDVVVFDT TYRTNTYDLI CAPFVGVIHH LQNVMFGCVL LSDETSCVFG FPNCCIWISK  300
FYYLPKLFFK TFRGTIQNCA RQTINHAASR IKQAQLQLCG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.188335e-31leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g051425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1493040.0AC149304.11 Medicago truncatula clone mth2-76g4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452265.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A072UB450.0A0A072UB45_MEDTR; FAR1 DNA-binding domain protein
STRINGAES755860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-52FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]