PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g052280.1
Common NameMTR_6g052280
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 130aa    MW: 14840.1 Da    PI: 11.2001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g052280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000116791730
                     HHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH  7 erErrRRdriNsafeeLrellPk.a 30
                      + r RR riN+++ +L+e++ + +
  Medtr6g052280.1 67 LAKRVRRTRINERMRKLQEVVLNiD 91
                     56799***************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.76E-55992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.660118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-46191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDFADSRFFC YMQNVGVRNQ VDTLSHHLSL TRKSSEMFVV ENLLQFPDSV TSSIRAKRGF  60
ARHPRSLAKR VRRTRINERM RKLQEVVLNI DKTYVSSHHR SSDLMSTLSL AAPPMGKKGC  120
ERGKKGWGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98579e-89root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g052280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1466641e-153AC146664.37 Medicago truncatula chromosome 6 clone mth2-10e20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642229.13e-47uncharacterized protein LOC11443252
SwissprotQ66GR31e-23BH130_ARATH; Transcription factor bHLH130
TrEMBLG7KL481e-91G7KL48_MEDTR; Transcription factor bHLH130, putative
STRINGAES756273e-92(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-26bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]