PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g053140.1
Common NameMTR_6g053140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 215aa    MW: 24663 Da    PI: 4.4384
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g053140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1416.4e-13118190280
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80 
                      fYn Y+ + GF  rks+  ++  +gei+++tf C ++ +++ +k++      +++++r++C+ak++v+ +  +g+w++++
  Medtr6g053140.1 118 FYNWYGCSHGFAGRKSRVVRN-VKGEIVQQTFLCERNRNPDVRKRE------HKPTSRCDCEAKIQVHIDFdSGRWYISN 190
                      9****************9999.8888*********99888877655......999***************99******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-10118190IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGKFTCSGQA AVIAGVTHWN MDIQEILNIF NAKNVSQVNE DCSEGLGGNN QSESDDYSSD  60
ENEGNTEAET NNEGYGCNFD SENGIECAAD IEKINFKETC SEEIMSYHFP SREVAFMFYN  120
WYGCSHGFAG RKSRVVRNVK GEIVQQTFLC ERNRNPDVRK REHKPTSRCD CEAKIQVHID  180
FDSGRWYISN EYNEEIWHSN VTDLWLFCYT GWWF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g053140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263931e-162CU326393.2 Medicago truncatula chromosome 5 clone mth4-5l6, COMPLETE SEQUENCE.
GenBankCU4590321e-162CU459032.2 Medicago truncatula chromosome 5 clone mth4-20f20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616094.33e-87protein FAR1-RELATED SEQUENCE 5
RefseqXP_024634427.13e-84protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072UAD81e-158A0A072UAD8_MEDTR; FAR1 DNA-binding domain protein
STRINGAES990524e-87(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]