PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g053200.1
Common NameMTR_6g053200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 537aa    MW: 59917.9 Da    PI: 6.7539
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g053200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.8e-23330389260
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      +D ++W KYGqK++ gs++prsY++C s+ +C++kk v++s++ ++++++t+ g Hnhek
  Medtr6g053200.1 330 EDWWSWTKYGQKNISGSPHPRSYFKCNSSkDCSAKKLVQKSDTKEDTFVVTFVGAHNHEK 389
                      799***********************8887****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-23323390IPR003657WRKY domain
PROSITE profilePS5081124.673324390IPR003657WRKY domain
SuperFamilySSF1182901.24E-20325390IPR003657WRKY domain
SMARTSM007741.2E-24329389IPR003657WRKY domain
PfamPF031062.3E-20330388IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDIDDWDLFS FVSSNKATTF TNQASFFENP SPSQTPTTVT TASTTNNTIS PQNIPPFYFD  60
GFSFAQDNNP VPFFPHKKND FIDLDKLKIN SNPTTTVPIL ITTITSSPIT IIPTPSTTTI  120
PDHITFGTIT NTSVHGLNKN STFFDCPTLI EQQQMQPNGH ELDKFIVNKN SVNPTLTNNF  180
NTPTLTTPPT PTRITPMITT NAFANPTTTF FTSTTTVPVS PSTTTNLTNI ITSAHGTSQY  240
PTISDYEILI KQQQIQSNNS NQVFDQAYNY SLVPQQPPRK LNQSSIQLPN IGSRVLPNSD  300
TQKEKHNSRI RKINNKVTLE CHVRTNKLSE DWWSWTKYGQ KNISGSPHPR SYFKCNSSKD  360
CSAKKLVQKS DTKEDTFVVT FVGAHNHEKP TGKWNKSSKI RLPAVGNVRS SRNVSKMGSQ  420
NVTMMHVDHP ESTNIQVLPG QSETEVIETH LPAAREIESS PNVENLFSYN MMMLQSDQPM  480
SSNAQVYSNE SQILPSRNKL IGNTDEDEEI MIPNMTGMSD DFLLDFNHLN GSFLFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g053200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072U9990.0A0A072U999_MEDTR; WRKY DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2058325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-23WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]