PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g055910.4
Common NameMTR_6g055910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 255aa    MW: 29273.9 Da    PI: 6.511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g055910.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-144285348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       ++ E++++  ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
  Medtr6g055910.4 42 MLSKHEEDKIMTLHQMLGNK-WSQIAQQLP-GRTDNEIKNYWHSYL 85
                     56899***************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.124134IPR017877Myb-like domain
SuperFamilySSF466894.18E-212089IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-82048IPR009057Homeodomain-like
PROSITE profilePS5129423.3733589IPR017930Myb domain
SMARTSM007171.2E-113987IPR001005SANT/Myb domain
PfamPF002493.1E-134285IPR001005SANT/Myb domain
CDDcd001672.34E-94485No hitNo description
Gene3DG3DSA:1.10.10.607.3E-214986IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSLSSSVQN KILLIIKGLQ RNGKSCRLRW INYLRPGLKR GMLSKHEEDK IMTLHQMLGN  60
KWSQIAQQLP GRTDNEIKNY WHSYLKKKEV KSKDIESHTQ IQYASSSSDT MNSLLSTQKY  120
AIQDPKYVLP ENINKSTATT HSDQSISKNY NTANEVCHSS LPKLLFSEWL SLDQVNGCNS  180
LNSDDSLVLK NGYDQNLIFQ ENVIQMPEGQ FGEEFHDSLI QNLENDVYYS QIQMSNQVDE  240
NELVHYLNND VMYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17148832107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g055910.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452393.10.0transcription factor LAF1 isoform X2
SwissprotQ9M0K44e-40LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A072UAI10.0A0A072UAI1_MEDTR; Myb transcription factor
STRINGAES757361e-175(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-41myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]