PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g060410.1
Common NameMTR_6g060410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 196aa    MW: 22545 Da    PI: 9.8897
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g060410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.64.8e-14102173268
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkv 68 
                      fY++YA ++GFsvr s+s+ + +ng   ++ fvCskeg+  +++++       +k++r+ra tr gC+a+++ 
  Medtr6g060410.1 102 FYEKYALSIGFSVRSSSSTIN-KNGVKRWKYFVCSKEGYLPNKTDDkeqsesIVKAKRRRALTREGCNANVVF 173
                      9**************999888.88889***********97666665567777788899***********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-12102173IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MLSLSAKTIT TSSLLPCLFF FASLSLSKLF SSHFLRHHKL GFQKITRLTF TSIELRSSFF  60
MDKDTSTSFQ IPQEYECVPN CDDELKPKIG QVFDTLQEGK FFYEKYALSI GFSVRSSSST  120
INKNGVKRWK YFVCSKEGYL PNKTDDKEQS ESIVKAKRRR ALTREGCNAN VVFYTGFART  180
HPLVFMWECF RKNIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g060410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743280.0AC174328.14 Medicago truncatula chromosome 6 clone mth2-115g4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634877.12e-76protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072U9Z01e-142A0A072U9Z0_MEDTR; FAR1 DNA-binding domain protein
STRINGAES898132e-65(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1590736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.15e-10FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]