PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g075990.1
Common NameMTR_6g075990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 261aa    MW: 29606.1 Da    PI: 9.9968
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g075990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.93.3e-081071811090
             FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +GF++ +++s+         + ++vC ++g+++  kkk  +++ ++ + ++gC  ++   ++k +++w ++ l+  HnH++ 
  Medtr6g075990.1 107 AGFTIDTQRSSLI-----NPMFRLVCERSGTHKVPKKK--SKHARTGSRKCGCLFMISGYQSKqTKEWGLNILNGVHNHPME 181
                      5666555544333.....346799*********99998..7888889999******98766666***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-5107181IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGIYVSYVEP CHGNPRNLMV DNAKDVPGET KPNVVENSGD VKPPNVEAKP NIGGASVHVE  60
ASMYVGGSGV LPLQPHEVDT AKFFSDDVKS KNRDELLEWV RRQENKAGFT IDTQRSSLIN  120
PMFRLVCERS GTHKVPKKKS KHARTGSRKC GCLFMISGYQ SKQTKEWGLN ILNGVHNHPM  180
EPALEGHILA DRLKEDDKKI VRDLTKSKML PRNILIHLKN QRPHCMTNVK QVYNERQQIW  240
KANRGDYWNK MCFTMNLIKF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248520.0glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g075990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1353960.0AC135396.33 Medicago truncatula chromosome 6 clone mth2-33o18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7KJS10.0G7KJS1_MEDTR; FAR1 DNA-binding domain protein
STRINGAES763150.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]