PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g080300.1
Common NameMTR_6g080300
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 93aa    MW: 9670.78 Da    PI: 7.5108
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g080300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer53.74.8e-175192345
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaA 45
                     ++rY+eC+kNh +s Ggh+vDG +Ef+++ +eegt +a+ CaA
  Medtr6g080300.1 51 TMRYRECQKNHVVSFGGHVVDGSCEFIAA-DEEGTLEAVICAA 92
                     689*************************9.999*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-155292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-105392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.0895492IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MTQILFSSST ASSPDGGPAR SSRHRSISSH SKLTVVVDGR KGNGNGGFVL TMRYRECQKN  60
HVVSFGGHVV DGSCEFIAAD EEGTLEAVIC AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g080300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482918e-81AC148291.22 Medicago truncatula clone mth2-14n3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615230.18e-29zinc-finger homeodomain protein 2
TrEMBLA0A072UB006e-61A0A072UB00_MEDTR; ZF-HD protein dimerization region protein
STRINGAES849223e-58(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.12e-15homeobox protein 28
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]