PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g081160.1
Common NameMTR_6g081160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 273aa    MW: 30982.5 Da    PI: 8.3045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g081160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27e-063052123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC+ Cgk+Fs+  +L  H r+H
  Medtr6g081160.1 30 YKCKTCGKTFSNGKTLGGHRRSH 52
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-52952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.33E-72952No hitNo description
PfamPF139123.9E-72952IPR007087Zinc finger, C2H2
SMARTSM003550.0163052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.9673057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SuperFamilySSF576672.33E-780105No hitNo description
SMARTSM003551785108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MRRYRSPLSS NEDDTKTMMN NEVLVQESTY KCKTCGKTFS NGKTLGGHRR SHFLKMKRNH  60
HQSQGNAYFN DDSYDDEEIA GKKKQTCYIC ENKFPIKNVF YGHMIRSHLD VVSKGVSPPS  120
NYDIQKSFSS NSSKYSTQQN KEDNLSLPKW QNRGKRGRKC IGVVEGATNL LHLMSNKYFC  180
TLSIDEQKSP EFPLPIKKRY CSVDESSSNG NGKKELIVNK NSFVLGCSLK IENKCDGNGD  240
ESDNNDEEKS NDAATEQNKL NFDLNDSYLV EE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g081160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003620338.10.0zinc finger protein 726
TrEMBLA0A396HKU00.0A0A396HKU0_MEDTR; Putative transcription factor C2H2 family
TrEMBLG7KM350.0G7KM35_MEDTR; C2H2-type zinc finger protein
STRINGAES765560.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-08C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]