PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g084120.1
Common NameMTR_6g084120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 264aa    MW: 30162 Da    PI: 6.9584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g084120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.5e-07165208451
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 
                      +h+ +Er RR +iN+++  L+ ++P +   + k +  a +L + ++Y 
  Medtr6g084120.1 165 SHSLAERVRRGKINEKLKCLQNIVPGC---Y-KTMGMAVMLDEIINYF 208
                      8************************98...2.3355555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-11159214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.36E-6159212No hitNo description
Gene3DG3DSA:4.10.280.101.1E-11161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.056161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4165191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-4167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAEFTENFQN IIRPSLPFLD SDQSMELLNQ FMENSNMNMM HNLMPFSCDS ILEHHQQEHV  60
FPRNLEENFH GLVHHVNNQN HNAVQLSLPT IFQEENKVHH EGKKRKMMDF QETSSGNSTP  120
AVSESGSKTK LSGGRGKRVK SYETEEEKAK EVVHVRARRG QATDSHSLAE RVRRGKINEK  180
LKCLQNIVPG CYKTMGMAVM LDEIINYFLS LKLTAASTYY DFNSEADDLE TMQRARASEA  240
KELARYKRDG YGGISCFQPT WPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.219760.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g084120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1860460.0AC186046.45 Medicago truncatula chromosome 6 clone mth2-81g1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641461.10.0LOW QUALITY PROTEIN: transcription factor BEE 3
SwissprotQ8GWK77e-56BEE3_ARATH; Transcription factor BEE 3
TrEMBLG7KN120.0G7KN12_MEDTR; Transcription factor
STRINGAES766710.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.17e-57BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]