PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g086555.1
Common NameMTR_6g086555
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 414aa    MW: 46085.7 Da    PI: 6.5712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g086555.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.91.8e-27205263158
                      ---SS-EEEEEEE--TT-.SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgs.efprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      ++Dgy+W KYG+Ke+kg+ ++pr+YYrCt+++C+v+k+ver+a++pk+v++ Yeg+Hnh
  Medtr6g086555.1 205 VNDGYRWHKYGRKEIKGNaNYPRGYYRCTTKTCNVRKQVERDAQNPKYVIVSYEGKHNH 263
                      58**************98358************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27192266IPR003657WRKY domain
PROSITE profilePS5081127.347200266IPR003657WRKY domain
SuperFamilySSF1182901.2E-22200266IPR003657WRKY domain
SMARTSM007746.2E-29205265IPR003657WRKY domain
PfamPF031061.8E-21206263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDNDDNNNNK VNQVLNSGVG CSAIRREKKY LIDLNEVCRS PDYSQADVDG FHMAMGGGVE  60
LQEEVQHPIS NLPFPTTLDQ GHGAEEEQAH VQNNAIMLNA EILRVRKGKM PMNYFEDAPT  120
QEIVATDEAK TVSSDEQQVP NTTIGVEASS IEGMMLLQHN DTSASGSSSQ RKRKIDFSEH  180
YKLPCTMINV APKVVFRIEI NEDKVNDGYR WHKYGRKEIK GNANYPRGYY RCTTKTCNVR  240
KQVERDAQNP KYVIVSYEGK HNHGLPMITK KNPTNSSTTS TTVARGNASI VPPPYALAMT  300
QPFTPLHRSE SYGSYGMNCI WPNNNPFLNM VNNTMMMPYR YINGQHFRDC YAAPSIAASQ  360
AVPSIGEFQI SPPLPKLHDL LQLSGYNIAA ATMFPFEGAA PTNHEANDSL NNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-222032661577Probable WRKY transcription factor 4
2lex_A4e-222032661577Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g086555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630822.11e-116probable WRKY transcription factor 2
TrEMBLA0A072UCB00.0A0A072UCB0_MEDTR; WRKY family transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2121434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.15e-24WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]