PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g087590.1
Common NameMTR_6g087590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CPP
Protein Properties Length: 608aa    MW: 65195.4 Da    PI: 7.1103
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g087590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.71.3e-14126164241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++++CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ +
  Medtr6g087590.1 126 KQRQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVD 164
                      789*************************.********986 PP
2TCR51.91.5e-16210249140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a++ Cse+C+C dCkN e
  Medtr6g087590.1 210 KHHKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFE 249
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.0E-17125165IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.562126250IPR005172CRC domain
PfamPF036383.0E-11128162IPR005172CRC domain
SMARTSM011148.7E-20210251IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.4E-13213248IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAEGEGGDCP PKNVVHPEFV TVTAAAATAA AAANATATAW LDVPSKKLAR QLDFNAMLME  60
QSKPQQQVVT QGSVMVQKPV GVGGLPMPVP AQVQTLQHSS VRVGKQESPK PRSRPNFEVK  120
EGTPKKQRQC NCKHSKCLKL YCECFASGIY CDGCNCVNCF NNVDNEAARR EAVEATLERN  180
PNAFRPKIAS SPQGARDSRE EAGEGLILIK HHKGCHCKKS GCLKKYCECF QANVLCSENC  240
RCMDCKNFEG SEERQALFRG DQNNNVYLQQ AANAAITGAI GSYGFSSPPA SKKRKGQELF  300
LWPTAKDPSI SKPGQQVNLV KGPAPSSSAS PVSSARGTNP TLGQSPSKLK YRSLLSDVVQ  360
PHHLKELCSV LVLVSGQAAK TLADQKKTVE KRTEDQTETS LASSTQEQLL SQKEVDVEKA  420
MDDDCSSANQ TDKISPGNSC SDGADVPKRP MSPGTLALMC DEQDSMFMTA ASPIGQTTHA  480
CNTSSQFPDG QGVTEVYAEQ ERIVLTQFRD FLNRVITMGE INETKCSSLA RSELENKKDL  540
INNETGNAST ETVHQQEATS NGDAKAAIPP MAATSTPAVP PMATTSTPVV PSDTVAENGE  600
SKLKMEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-331182572130Protein lin-54 homolog
5fd3_B8e-331182572130Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g087590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1348230.0AC134823.43 Medicago truncatula chromosome 6 clone mth2-20d18, complete sequence.
GenBankAC2254830.0AC225483.5 Medicago truncatula clone mth2-25o13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003620600.20.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0C3VZM00.0A0A0C3VZM0_MEDTR; Putative transcription factor Tesmin family
STRINGAES768180.0(Medicago truncatula)
STRINGAES768960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-144Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]