PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g090405.1
Common NameMTR_6g090405
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 256aa    MW: 28665.9 Da    PI: 5.6227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g090405.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.7e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd++l++++++ G+  +W + + + g++R++k+c++rw++yl
  Medtr6g090405.1 14 RGPWSNEEDDILKHYIQENGNAgNWISLPLKAGLNRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
2Myb_DNA-binding41.43.2e-1371111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  Medtr6g090405.1  71 FTKEEDNIICTLFSTIGSR-WSFIAAQLP-GRTDNDVKNHWNT 111
                      9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.548962IPR017930Myb domain
SuperFamilySSF466897.86E-2612109IPR009057Homeodomain-like
SMARTSM007173.2E-101364IPR001005SANT/Myb domain
PfamPF002491.6E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-211569IPR009057Homeodomain-like
CDDcd001671.60E-71662No hitNo description
PROSITE profilePS5129420.02363117IPR017930Myb domain
SMARTSM007171.8E-1167115IPR001005SANT/Myb domain
PfamPF002499.6E-1270111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2270117IPR009057Homeodomain-like
CDDcd001673.30E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSNE EDDILKHYIQ ENGNAGNWIS LPLKAGLNRC GKSCRLRWLN  60
YLRPNIKLGG FTKEEDNIIC TLFSTIGSRW SFIAAQLPGR TDNDVKNHWN TKLKKKYVAG  120
NSSTSSTIYT FNNTTSSDHF SSTLTFQPQL EAPFVFDQKP NTPCFDSYNF LDLHETPISN  180
IPLPIKMESE AFYTGSSLSS SCSTTPTTKE ISSFSSAPFL EEQNNDNQCF EYDHDDAILL  240
EMFLDDLLNH GPSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141167107B-MYB
1h8a_C2e-231411627127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g090405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453206.10.0transcription factor MYB87
TrEMBLA0A072UBN70.0A0A072UBN7_MEDTR; Myb transcription factor
STRINGXP_004503043.11e-110(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.19e-66myb domain protein 84
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]