PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g453130.1
Common NameMTR_6g453130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 232aa    MW: 25275.8 Da    PI: 9.0769
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g453130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.72.7e-264109199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqql 87 
                      +C++C+vlr++C++dC++ p++     p++q +++ +++k++G++ +l+ll+++ +++   +++++sl+yeA  r+ +P yGa+g+++++++  
  Medtr6g453130.1   4 SCNGCRVLRKGCSDDCIIKPCLewiscPESQGNATLFLAKFYGRTGLLNLLTNATNQNqnPPAVFKSLLYEASGRLVNPTYGALGLLWTGNWSR 97 
                      6**************************************************99955542369******************************** PP

           DUF260  88 eqlkaelallke 99 
                      +++++e++l+++
  Medtr6g453130.1  98 CEAAVEAVLTGS 109
                      ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.3123111IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-214106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKFSCNGCRV LRKGCSDDCI IKPCLEWISC PESQGNATLF LAKFYGRTGL LNLLTNATNQ  60
NQNPPAVFKS LLYEASGRLV NPTYGALGLL WTGNWSRCEA AVEAVLTGSN INDNFSTIDG  120
KTSSGTLNAE NHVLPKTYDI RHVAKDTNVD IKGKTQFKRV GQVLKPKPRV GSIDSATMLK  180
SLLKNTNMEI GETSSRVQTE KINEAAENQV NLELTLGFDS QSTKGKKILD K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g453130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452313.11e-171LOB domain-containing protein 41
TrEMBLA0A072UAA21e-170A0A072UAA2_MEDTR; LOB domain protein
STRINGAES845561e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-51LOB domain-containing protein 41
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]