PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g477950.1
Common NameMTR_6g477950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 318aa    MW: 36285.9 Da    PI: 8.9921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g477950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.3e-1257143996
                      HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       v++++ + +p++  +e  +++++   ++l d  +++++  +l+  ++++++  l++GW++Fvk+ +LkegD ++F+ld+   + l+v+v
  Medtr6g477950.1  57 EVTTRCDIHFPNRVSREVLKQPQKW--MKLVDmNTNKEYWCRLNTgERNKDEKALGRGWSKFVKDRRLKEGDKLIFELDR-PPTILFVQV 143
                      5788999999999999996666665..555554555666666655588888899***********************987.555566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.0849147IPR003340B3 DNA binding domain
SMARTSM010199.6E-454147IPR003340B3 DNA binding domain
PfamPF023623.8E-957142IPR003340B3 DNA binding domain
CDDcd100174.64E-1058144No hitNo description
Gene3DG3DSA:2.40.330.104.0E-1058137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1260145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF502494.88E-9184282IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1401.1E-4187282IPR012340Nucleic acid-binding, OB-fold
CDDcd044802.96E-22198282No hitNo description
PfamPF027216.5E-6218308IPR003871Domain of unknown function DUF223
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNLTLKCGAG AAFGHGWNWK IEKLPWDFGQ YLQHNICQTL MLCGDNGDHQ LLDTVLEVTT  60
RCDIHFPNRV SREVLKQPQK WMKLVDMNTN KEYWCRLNTG ERNKDEKALG RGWSKFVKDR  120
RLKEGDKLIF ELDRPPTILF VQVILNQSNI TLLPLQPITT SISVLSSIAP YSMAGKGSSM  180
ERPVQLISDV NDKKDLWKLA VKVKNKWTVV KDGKEHLELV IVDDKGNDIQ VIIPTGYKAV  240
YDKILEENTT YTLSNFNVLN NNDLAFKTSD HKYKLKCTSG TTLGDKNMHT ISCDNIKFKP  300
FAEILTGKWR ADLLVRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g477950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072UB720.0A0A072UB72_MEDTR; B3 DNA-binding domain protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]