PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g016630.1
Common NameMTR_7g016630
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29223.4 Da    PI: 9.8975
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g016630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+ +qvtf kRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Medtr7g016630.1  9 KRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSS 59
                     79***********************************************96 PP
2K-box89.65.7e-3077169597
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      + + ++++++ +++ e+ kL ++++ L+r++R+++G+dL++Ls+keLq+LeqqL++slk+iR++Kn+++ ++i+el k+ + lqe+n++L k 
  Medtr7g016630.1  77 ELTGATNETQGNWSFEYMKLTAKVQVLERNLRNFVGNDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNNKLAKT 169
                      44447888899*******************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-31289IPR002100Transcription factor, MADS-box
CDDcd002651.62E-38275No hitNo description
PRINTSPR004043.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2684168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.62886177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSQQVT FFKRRTGLLK KANEISVLCD AQVALIMFST KGKLFEYSSA  60
PSMEDILERY ERQNHTELTG ATNETQGNWS FEYMKLTAKV QVLERNLRNF VGNDLDPLSV  120
KELQSLEQQL DTSLKRIRTR KNQVMNQSIS ELHKRARTLQ EQNNKLAKTK EKEKTVSEHP  180
QRCLETIGIG QCSSTLNLIC QPEVLPPPQR LVPSLNLSGT LQARGSLEFE EAGEAQTVPR  240
SNHSLIPPWM LHHLTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18174173MEF2C
5f28_B6e-18174173MEF2C
5f28_C6e-18174173MEF2C
5f28_D6e-18174173MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g016630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9741840.0JN974184.1 Pisum sativum MADS-box protein (FULc) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621521.10.0truncated transcription factor CAULIFLOWER A
SwissprotD7SMN63e-85FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLG7KR160.0G7KR16_MEDTR; MADS-box transcription factor
STRINGAES777390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-76AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]