PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g017320.1
Common NameMTR_7g017320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 348aa    MW: 38914.9 Da    PI: 4.9428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g017320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.5e-1752101255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h+e E+rRR++iN++f+ Lr+l+P++    + K +Ka+ L +++eYI+ Lq
  Medtr7g017320.1  52 RSKHSETEQRRRSKINERFQALRDLIPEN----DSKRDKASFLLEVIEYIHFLQ 101
                      899*************************9....89*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-2249121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.24450100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-2050129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-1752105No hitNo description
PfamPF000103.5E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1456106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MARSAKGHQD EELVDDDDDQ DIFTPNTSSS INNNNNVKVD EPIRGKRANP HRSKHSETEQ  60
RRRSKINERF QALRDLIPEN DSKRDKASFL LEVIEYIHFL QEKLQIYEHP YEGWNQEPTK  120
LIPWRNHHGP SENTTDPSRA IQNGSVDGKN IVSPSFPKNV QNPILSDPST TIPKGCTPGS  180
STEVVPLTMQ MRLDMFDPVV SGGMVTQQML ELPVSNPDMA SNLQPQVWLG KPNKDNHIVS  240
DNTLKEQEEM KIDSGSESDS ISSAYSQRIL GTLTQALQSS GVDLSQTNVS VDIDVGRRTN  300
TGFTPCQYSS KSNENQFVSN QAIACSGMDY FSEDSEQSSK RFRREAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.164450.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g017320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1727420.0AC172742.2 Medicago truncatula chromosome 7 clone mth2-16i6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621577.10.0transcription factor BIM2
TrEMBLG7KRZ10.0G7KRZ1_MEDTR; Putative transcription factor bHLH family
STRINGAES777950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.11e-52BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]