PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g017320.2
Common NameMTR_7g017320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 281aa    MW: 31724.2 Da    PI: 5.2261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g017320.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.41.1e-1752101255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h+e E+rRR++iN++f+ Lr+l+P++    + K +Ka+ L +++eYI+ Lq
  Medtr7g017320.2  52 RSKHSETEQRRRSKINERFQALRDLIPEN----DSKRDKASFLLEVIEYIHFLQ 101
                      899*************************9....89*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.9E-2349121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.24450100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-2050129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-1752105No hitNo description
PfamPF000102.5E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1456106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MARSAKGHQD EELVDDDDDQ DIFTPNTSSS INNNNNVKVD EPIRGKRANP HRSKHSETEQ  60
RRRSKINERF QALRDLIPEN DSKRDKASFL LEVIEYIHFL QEKLQIYEHP YEGWNQEPTK  120
LIPWRNHHGP SENTTDPSRA IQNGSVDGKN IVSPSFPKNV QNPILSDPST TIPKGCTPGS  180
STEVVPLTMQ MRLDMFDPVV SGGMVTQQML ELPVSNPDMA SNLQPQVWLG KPNKDNHIVS  240
DNTLKEQEEM KIDSGSESDS ISSAYSQRCR FVPDQCIGRY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.164450.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g017320.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1727420.0AC172742.2 Medicago truncatula chromosome 7 clone mth2-16i6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621577.10.0transcription factor BIM2
SwissprotQ9FMB64e-40BIM3_ARATH; Transcription factor BIM3
TrEMBLA0A072U7F10.0A0A072U7F1_MEDTR; Transcription factor BIM2-like protein
STRINGAES777950.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.15e-42BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]