PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g018500.1
Common NameMTR_7g018500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 375aa    MW: 42704.9 Da    PI: 7.1607
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g018500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.56.3e-441182472132
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+ai elt+++++ as   +++++s s+s  ss++  +++
  Medtr7g018500.1 118 PAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNNIASGDdDDGDHSFSSS--SSDEGDEED 209
                      68**************************************************************6666633333344444433..333333333 PP

              TCP  95 akskksqksaasalnlakesrakarararertrekmri 132
                       ++ ++ k+a++ +++ k+sr+karararer +e +++
  Medtr7g018500.1 210 YTKDRKMKRAQKESSKTKDSREKARARARERASEMKMQ 247
                      3555555555555999**************87764333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-37119247IPR005333Transcription factor, TCP
PROSITE profilePS5136935.735120178IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.75227244IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MFPSTYCSLG PYPCYNPNSS SSSHSYPPFT FLTPDQNASS NTNNNNNNNN TNNINNFLHD  60
PTISVPYTQT THNHVPINPD TLTNWAVADY AAMLKQDLSG SSHYNLSNLL TKKPVKKPAK  120
KDRHSKIHTS QGLRDRRVRL SIEIARKFFD LQDMLGFDKA SNTLEWLFNK SKEAIEELTR  180
SKNNIASGDD DDGDHSFSSS SSDEGDEEDY TKDRKMKRAQ KESSKTKDSR EKARARARER  240
ASEMKMQEDL KEKYPEIDQN QQILHQLMPN EDETSKSLQR DDIFNFIEES IVIKRKLKKS  300
SSHHYQQNTN LIPKEASFDH DSPMLSPNWD ANNNNNDAAT GRSNFSAISR MNLSSGLQIF  360
GKSWEDCNTS PNRY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.186670.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g018500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447731.10.0transcription factor DICHOTOMA
TrEMBLA0A072TXB50.0A0A072TXB5_MEDTR; Putative transcription factor TCP family
STRINGGLYMA08G28691.12e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-26TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]