PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g020870.2
Common NameMTR_7g020870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 246aa    MW: 26785.9 Da    PI: 5.8338
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g020870.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.23.8e-2740131186
         trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rWt+qe+l+Li+++++ e+r++ g+      + +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + ++l+
  Medtr7g020870.2  40 RWTRQEILVLIQGKSDAESRFKPGRngsgfgSSEPKWALVSSYCKKHGVNRGPIQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLR 131
                      8*********************986666777*********************************************9999999998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.78333103IPR017877Myb-like domain
CDDcd122035.68E-1539110No hitNo description
PfamPF138373.4E-1340126No hitNo description
Gene3DG3DSA:1.10.10.601.6E-440102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MALEQPNPNS DDGTVNGNGT PPSSAVNGGE DGKPTARLPR WTRQEILVLI QGKSDAESRF  60
KPGRNGSGFG SSEPKWALVS SYCKKHGVNR GPIQCRKRWS NLAGDYKKIK EWESQVRDET  120
ESFWLMRNDL RRERKLPGYF DKEVYEILDS PSMAVAAAAA VAASVVVPVN VSVSVSETVG  180
GDEEVHIYDS NRKVSGEDGL FSDFEKDEVL VANKDVHVPS PVPISEKQFL PLLRGCQGEG  240
NAPGK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.116630.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g020870.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621623.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-66ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLG7KSV71e-180G7KSV7_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGAES778410.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-68Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]