PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g022250.1
Common NameMTR_7g022250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 240aa    MW: 26817 Da    PI: 5.1842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g022250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-0587109123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C++ F+++  L  H++ H
  Medtr7g022250.1  87 YSCKFCSRKFTTPQALGGHQSAH 109
                      99*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-585114No hitNo description
PROSITE profilePS5015711.19887114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MCNTNENKGK EKVNEESISN LKMMENQNNV NKRKVIVMEE SHVETETSKF PQKDIAEEES  60
IDSPKEISPF LLFGFIVDQR KGIQNAYSCK FCSRKFTTPQ ALGGHQSAHK FERSLVKKRI  120
QAFSKAWINY SNGNQGISLN NVTPFHMGCG CQCYGFNNMI QHAGSSNFYA GNLFGALSHI  180
PHIDEVNEAD QGILSHKVNM TEIEFGSILE GGVVSDEVDQ EDNETQEEEA SKIDLTLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g022250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1591460.0AC159146.4 Medicago truncatula chromosome 7 BAC clone mth2-75l24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447966.11e-116zinc finger protein 1
TrEMBLG7KUQ71e-177G7KUQ7_MEDTR; Zinc finger protein
STRINGAES779541e-178(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1627936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.19e-12C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]