PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g022270.1
Common NameMTR_7g022270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 162aa    MW: 18110.3 Da    PI: 8.2866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g022270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-056486123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F+ ++ L  H+++H
  Medtr7g022270.1 64 YSCKFCSRKFTAPHALGGHQSSH 86
                     99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-56291No hitNo description
PROSITE profilePS5015710.6376491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MENHNNNNKR KVIVMDESHV ETKNSKSPQK DIPEKESIDS PKEISPFLLF GFIVNHRKGI  60
QNAYSCKFCS RKFTAPHALG GHQSSHKFDK SLVKKRIQAF NETWMNYSNG STNFHARNLY  120
GALPHVPHID GVNEADQGIA SHHKVNMTEI AEGGVVSDEV D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g022270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1591460.0AC159146.4 Medicago truncatula chromosome 7 BAC clone mth2-75l24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621738.11e-118zinc finger protein 4
TrEMBLG7KUQ91e-117G7KUQ9_MEDTR; Zinc finger protein, putative
STRINGAES779561e-118(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1627936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-09zinc finger protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]