PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g023810.1

Common Name

MTR_7g023810

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

WOX

Protein Properties

Length: 184aa MW: 20975.2 Da PI: 5.8634

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g023810.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.3e-20	66	125	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+t+t+ ql+ Le+ Fe + +ps+e+++e+++ l +++e+ V++WFqNrRa+ k Medtr7g023810.1 66 RQRWTPTPVQLQSLERIFEAeTGTPSKEKIKEITADLtkhgQISETSVYNWFQNRRARSK 125 79***************88***********************************98 PP
2	Wus_type_Homeobox	87.7	1.2e-28	66	128	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++ Le+++++ + tP+ke+i++ita L+++G+i+++ V++WFQNr+aR++ kq Medtr7g023810.1 66 RQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRRARSKGKQ 128 79**********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.301	62	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.74E-16	63	129	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-10	64	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-15	64	131	IPR009057	Homeodomain-like
CDD	cd00086	7.65E-10	66	128	No hit	No description
Pfam	PF00046	4.8E-18	66	125	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEWQRNGFNQ NANVGMMQVN VMTNEQVETL RKQIAVYSVI SEQLIQTHKT LSSQQDLTLT 60 GSTRLRQRWT PTPVQLQSLE RIFEAETGTP SKEKIKEITA DLTKHGQISE TSVYNWFQNR 120 RARSKGKQQN NVNDEPEVET EVDSNDKKTE PEIVASQSAK NLCSQYLADL NSESDDSLRR 180 SRN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARSKGKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g023810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492097.1	9e-73	WUSCHEL-related homeobox 13-like
Swissprot	O81788	2e-46	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	G7KVS3	1e-132	G7KVS3_MEDTR; Homeodomain protein HB2
STRING	AES78040	1e-133	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-49	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Medtr7g023810.1
Entrez Gene	11439774

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]