PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g024670.1
Common NameMTR_7g024670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 374aa    MW: 40499.8 Da    PI: 9.2326
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g024670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.43.1e-3875132461
           zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+r+n+k+
  Medtr7g024670.1  75 AAQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRRNNKR 132
                      5789**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2455121IPR003851Zinc finger, Dof-type
PfamPF027014.6E-3276131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3277131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVFPSLPIYL DPPNWSQQQA GIGIGDQNPS ALQPLSASMM SVTVEADGSY QGSRRPVSMT  60
DRAKMSKIHQ NDAAAAQKCP RCESTNTKFC YYNNYNLSQP RHFCKTCRRY WTKGGALRNV  120
PVGGGCRRNN KRRKGNSVSK SPLKPNHNDH LQIGTGAAAG GSSSASANSS SNNGCTNSNV  180
NIGMPNFPTQ FPFVTSLHRH NDNSYASEGI GSLLAKNMSN STTTNVEFQL GSGSSSIGNG  240
NGGSLLISNG IGEQWRFPNS LQIHQQQQYQ QFPFLSNLQP QIGLFQFGGE NNGEPQRNLF  300
RSKETYSSSV SIGMMPQVNT VKVEENNHQG LSLPKNLLSG SGNSNDLFWN GNGNENAWNE  360
VPSFTPPPCD PQI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.148560.0flower| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g024670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621892.10.0dof zinc finger protein DOF2.4
TrEMBLG7KXU50.0G7KXU5_MEDTR; Dof domain zinc finger protein
STRINGAES781100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-32OBF-binding protein 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]