PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g026400.1
Common NameMTR_7g026400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 603aa    MW: 68238.6 Da    PI: 7.7472
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g026400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.91.3e-24157210155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k++l+Wtp LH+ F+ av+q+ G ekA+Pk+ile+m+++ Lt+e+v+SHLQkYR+
  Medtr7g026400.1 157 KQKLVWTPYLHKMFLLAVNQI-GLEKAVPKKILEIMNIPNLTRENVASHLQKYRI 210
                      79*******************.********************************6 PP
2Response_reg47.78.3e-17159924107
                      EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
     Response_reg  24 eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                      ++v +a+d++ al +l+e++  +Dl+++   + gm+Gle+ k+i+ +  ++pii+++  + ++++ + l+ Ga ++++Kpf  e+ 
  Medtr7g026400.1  15 TIVVTAKDARHALITLQENEglFDLVITEFHLVGMNGLEFQKHIKDQF-QIPIIMMSEDNRPSLISKTLENGAAQYIVKPFCAEDF 99 
                      3788**************999*************************99.*******************************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004486.4E-61103IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.2921107IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-1315100IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.28E-1816110IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.1E-2216133No hitNo description
CDDcd001561.42E-1617107No hitNo description
SuperFamilySSF466894.48E-18155214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-25156214IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-24157210IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MNPHKATLSK INPQTIVVTA KDARHALITL QENEGLFDLV ITEFHLVGMN GLEFQKHIKD  60
QFQIPIIMMS EDNRPSLISK TLENGAAQYI VKPFCAEDFK DIWKYVMEGK KEKLFIESLF  120
VRNEEEETSS EPKNKKKHCK RKSKESQGEK DIQVVKKQKL VWTPYLHKMF LLAVNQIGLE  180
KAVPKKILEI MNIPNLTREN VASHLQKYRI FLRDVAEKGM VEGMSQRALE SRFASSLPSS  240
VIREIEEKRT NKLLAPTLQY LQTLAYQTRG VNNVFNNFNQ FPTHHVDQFP YIQKGLALQD  300
LEQVRLGKSK LEANAVVENS GHDQNRFGIS SSNLPFFQAK NSFNDGASTS FSSYRGEQGL  360
MVSSSSSFLT RDFKCGDIRN QNHGVKTSNF GSLASPNIMP HKFTSDARNN NHFGIQLNNR  420
AEMVGIGTMN NGLRDSSANN NSFFFNKRGQ NENKNCRSFV NENFGLVQGG FGLDSISDIR  480
GGSGREFLAG SVNNEGNVSK NRQFPQHKLN GNVVENVQKY NGSTFTNEVD FNTIEFNNFD  540
YLMADDKNLH NELQGNEEFS NGEPSNRFLE GKVSEASTSA TNLEYDMDFV KALFDTIEDY  600
RD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-18156216464ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g026400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1841610.0AC184161.3 Medicago truncatula chromosome 7 BAC clone mte1-26k23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513697.11e-159putative two-component response regulator ARR13
TrEMBLG7L0330.0G7L033_MEDTR; Response regulator receiver domain protein
STRINGAES782530.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-40response regulator 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]