PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g027265.1
Common NameMTR_7g027265
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 141aa    MW: 16501.5 Da    PI: 7.0185
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g027265.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-192273556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++t+ q+++Le+lF+ +++p ++++ +L+++l L+ rq+ vWFqN+Ra++k
  Medtr7g027265.1 22 KRHTPRQIQRLEALFKDCSHPCEQHKLQLSRELALSPRQIDVWFQNKRAQMK 73
                     4699**********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-181069IPR009057Homeodomain-like
SuperFamilySSF466891.37E-161076IPR009057Homeodomain-like
PROSITE profilePS5007115.5641575IPR001356Homeobox domain
SMARTSM003897.8E-161879IPR001356Homeobox domain
CDDcd000868.23E-141976No hitNo description
PfamPF000461.2E-162273IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEHHGEGSIS SNTDYMRMKR SKRHTPRQIQ RLEALFKDCS HPCEQHKLQL SRELALSPRQ  60
IDVWFQNKRA QMKTREERYD NPKLIEENDK IRSENITIRE ALENVICSTC GGPSINVDCD  120
FDEQKLRIEN AQLKEENFNG *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g027265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152598.13e-51hypothetical protein PHAVU_004G143500g
SwissprotQ69T584e-49ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A072U7Y31e-100A0A072U7Y3_MEDTR; Homeobox leucine zipper family protein
STRINGXP_007152598.11e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2115934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.13e-46homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]