PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g028855.1
Common NameMTR_7g028855
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 463aa    MW: 52741.9 Da    PI: 6.0483
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g028855.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.91.9e-19134225191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      +fY +Y+k  GF vrks  + +  n+ei++r++vC+k+g re+++ + ++++r +r  trt+C  +l+v+ +  +g+++v+  e+ HnHel+p
  Medtr7g028855.1 134 DFYFKYGKCKGFYVRKSDIRCN-VNDEIVMRQYVCNKQGLREKKHLSrSDRQRDHRRLTRTKCPSRLRVHYRPkKGRYVVSISEEGHNHELTP 225
                      6****************99998.7777***************9998757788889*****************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-18134225IPR004330FAR1 DNA binding domain
PROSITE profilePS509949.949263379IPR001584Integrase, catalytic core
SuperFamilySSF530983.54E-12264341IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.107.8E-11266338IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MENKNNDFTD FGPAEYDYGS TDVDLNDDKT YPVIVGSQGK STENVEHNVD DDSYNNDGSH  60
DNASDDDGCS GDYSEDDKGE DDESEGDEGK DDKGDNNLDE DDVVVVGEEM VRINSLTADG  120
IRAMEFAGVV EADDFYFKYG KCKGFYVRKS DIRCNVNDEI VMRQYVCNKQ GLREKKHLSR  180
SDRQRDHRRL TRTKCPSRLR VHYRPKKGRY VVSISEEGHN HELTPSSVVH LHPVYRKISE  240
TDKAQIDGLQ SHEIRTCHIM GYMEFVMSFI QNHILYRFGI PETITTDEGL IFIGQKMVGF  300
ANQTGFKLLT STPYYAEENG QLEVANKIVI TLIKKHSTKA NGNSKRSILG YDVGCVGRCG  360
RRKTDGIGSA FEEKRTRRKS LYKNLFNIGD SVWKVHLPMD KIDRVLGKWS TNWEGPFKVI  420
QVFLNGAYEI EELASNNRIF RINGKFLKKY MSILQEVKIT QE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g028855.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626574.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A072TYR10.0A0A072TYR1_MEDTR; FAR1 DNA-binding domain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-12FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]