PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g028890.1
Common NameMTR_7g028890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 221aa    MW: 24573.8 Da    PI: 6.5135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g028890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-0583105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C++ F+++  L  H+++H
  Medtr7g028890.1  83 YSCKFCSRKFTSPQALGGHQSSH 105
                      99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-681111No hitNo description
PROSITE profilePS5015711.30283110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MCNKGKDKVN EESVANLKMM VNQNNEKKRK AIMLEESDVE TQNSKTPLKD VAEEESTDSS  60
KKISPFLLFG FIVDHRKAIK NAYSCKFCSR KFTSPQALGG HQSSHKLERS LKKMIQGISL  120
NTITPFHMGC GYQCYGFNNM IQHGGSSNLY AGNLYGAFQH ISEIDEANEA DQSMMSQKVI  180
VSKIEVGKFS EGGAVSDEVD REDKETQEEE ASKIDLTLKL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g028890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447966.11e-163zinc finger protein 1
TrEMBLA0A072TYR61e-162A0A072TYR6_MEDTR; Putative transcription factor C2H2 family
STRINGAES779541e-116(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1627936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.18e-12zinc finger protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]